Detailed information of SNP:
|
SNP ID:
sf0133241778(Gbrowse)
Chromosome: chr01 Position: 33241778 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 64.15% | 35.85% |
| All Indica | 798 | 96.74% | 3.26% |
| All Japonica | 497 | 9.46% | 90.54% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 12.54% | 87.46% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133241778 | C->T | LOC_Os01g57540(LOC_Os01g57540.1) | INTRON |