Detailed information of SNP:
|
SNP ID:
sf0133242478(Gbrowse)
Chromosome: chr01 Position: 33242478 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 60.68% | 39.32% |
| All Indica | 795 | 96.10% | 3.90% |
| All Japonica | 497 | 9.46% | 90.54% |
| Aus | 66 | 39.39% | 60.61% |
| Indica I | 374 | 95.99% | 4.01% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 335 | 12.24% | 87.76% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133242478 | G->A | LOC_Os01g57540(LOC_Os01g57540.1) | UTR_3_PRIME |