Detailed information of SNP:
|
SNP ID:
sf0133243604(Gbrowse)
Chromosome: chr01 Position: 33243604 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 63.98% | 36.02% |
| All Indica | 796 | 40.45% | 59.55% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 375 | 16.27% | 83.73% |
| Indica II | 210 | 91.90% | 8.10% |
| Indica Intermediate | 211 | 32.23% | 67.77% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133243604 | A->G | INTERGENIC | None |