Detailed information of SNP:
|
SNP ID:
sf0133243621(Gbrowse)
Chromosome: chr01 Position: 33243621 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 61.21% | 38.79% |
| All Indica | 799 | 96.87% | 3.13% |
| All Japonica | 497 | 9.66% | 90.34% |
| Aus | 66 | 37.88% | 62.12% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 12.54% | 87.46% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133243621 | T->G | INTERGENIC | None |