Detailed information of SNP:
|
SNP ID:
sf0133256031(Gbrowse)
Chromosome: chr01 Position: 33256031 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1200 | 57.83% | 42.17% |
| All Indica | 588 | 96.09% | 3.91% |
| All Japonica | 494 | 8.70% | 91.30% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 334 | 96.11% | 3.89% |
| Indica II | 96 | 96.88% | 3.12% |
| Indica Intermediate | 158 | 95.57% | 4.43% |
| Temperate Japonica | 333 | 11.71% | 88.29% |
| Tropical Japonica | 93 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 38 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133256031 | G->T | INTERGENIC | None |