Detailed information of SNP:
|
SNP ID:
sf0133258126(Gbrowse)
Chromosome: chr01 Position: 33258126 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 92.45% | 7.55% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 496 | 81.25% | 18.75% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133258126 | C->A | INTERGENIC | None |