Detailed information of SNP:
|
SNP ID:
sf0133265756(Gbrowse)
Chromosome: chr01 Position: 33265756 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 54.83% | 45.17% |
| All Indica | 799 | 90.11% | 9.89% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 35.00% | 65.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133265756 | G->A | LOC_Os01g57570(LOC_Os01g57570.2) | INTRON |
| sf0133265756 | G->A | LOC_Os01g57570(LOC_Os01g57570.1) | INTRON |