Detailed information of SNP:
|
SNP ID:
sf0133275624(Gbrowse)
Chromosome: chr01 Position: 33275624 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 64.95% | 35.05% |
| All Indica | 799 | 62.33% | 37.67% |
| All Japonica | 497 | 72.03% | 27.97% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 87.47% | 12.53% |
| Indica II | 213 | 8.92% | 91.08% |
| Indica Intermediate | 211 | 71.56% | 28.44% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133275624 | C->T | INTERGENIC | None |