Detailed information of SNP:
|
SNP ID:
sf0133275815(Gbrowse)
Chromosome: chr01 Position: 33275815 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 63.82% | 36.18% |
| All Indica | 797 | 40.65% | 59.35% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 375 | 16.53% | 83.47% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 209 | 32.06% | 67.94% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133275815 | C->A | INTERGENIC | None |