Detailed information of SNP:
|
SNP ID:
sf0133277071(Gbrowse)
Chromosome: chr01 Position: 33277071 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 75.39% | 24.61% |
| All Indica | 799 | 62.58% | 37.42% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 375 | 87.47% | 12.53% |
| Indica II | 213 | 9.39% | 90.61% |
| Indica Intermediate | 211 | 72.04% | 27.96% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133277071 | G->A | INTERGENIC | None |