Detailed information of SNP:
|
SNP ID:
sf0133304469(Gbrowse)
Chromosome: chr01 Position: 33304469 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 62.26% | 37.74% |
| All Indica | 769 | 80.75% | 19.25% |
| All Japonica | 497 | 29.18% | 70.82% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 350 | 62.00% | 38.00% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 207 | 93.24% | 6.76% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 36 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133304469 | T->C | INTERGENIC | None |