Detailed information of SNP:



SNP ID: sf0133304690(Gbrowse)

Chromosome: chr01

Position: 33304690
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 78.56% 21.44%
All Indica798 63.16% 36.84%
All Japonica497 99.60% 0.40%
Aus67 100.00% 0.00%
Indica I374 87.43% 12.57%
Indica II213 10.33% 89.67%
Indica Intermediate211 73.46% 26.54%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 83.33% 16.67%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0133304690 C->T INTERGENIC None