Detailed information of SNP:
|
SNP ID:
sf0133337706(Gbrowse)
Chromosome: chr01 Position: 33337706 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1263 | 87.17% | 12.83% |
| All Indica | 646 | 75.54% | 24.46% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 258 | 50.39% | 49.61% |
| Indica II | 208 | 99.04% | 0.96% |
| Indica Intermediate | 180 | 84.44% | 15.56% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133337706 | C->T | INTERGENIC | None |