Detailed information of SNP:
|
SNP ID:
sf0133380099(Gbrowse)
Chromosome: chr01 Position: 33380099 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 61.86% | 38.14% |
| All Indica | 799 | 95.24% | 4.76% |
| All Japonica | 496 | 4.64% | 95.36% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 6.27% | 93.73% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133380099 | T->C | INTERGENIC | None |