Detailed information of SNP:
|
SNP ID:
sf0133380735(Gbrowse)
Chromosome: chr01 Position: 33380735 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 69.36% | 30.64% |
| All Indica | 793 | 46.53% | 53.47% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 24.19% | 75.81% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 208 | 39.90% | 60.10% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133380735 | C->T | INTERGENIC | None |