Detailed information of SNP:
|
SNP ID:
sf0133388781(Gbrowse)
Chromosome: chr01 Position: 33388781 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1344 | 95.16% | 4.84% |
| All Indica | 798 | 99.37% | 0.63% |
| All Japonica | 424 | 86.32% | 13.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 272 | 79.04% | 20.96% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 60 | 98.33% | 1.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133388781 | C->T | LOC_Os01g57735(LOC_Os01g57735.1) | UTR_5_PRIME |