Detailed information of SNP:
|
SNP ID:
sf0133399520(Gbrowse)
Chromosome: chr01 Position: 33399520 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1164 | 56.19% | 43.81% |
| All Indica | 559 | 14.13% | 85.87% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 60 | 73.33% | 26.67% |
| Indica I | 245 | 17.55% | 82.45% |
| Indica II | 159 | 6.92% | 93.08% |
| Indica Intermediate | 155 | 16.13% | 83.87% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 34 | 67.65% | 32.35% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133399520 | G->A | INTERGENIC | None |