Detailed information of SNP:
|
SNP ID:
sf0133412928(Gbrowse)
Chromosome: chr01 Position: 33412928 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1374 | 60.26% | 39.74% |
| All Indica | 795 | 97.48% | 2.52% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 29 | 96.55% | 3.45% |
| Indica I | 373 | 96.51% | 3.49% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 209 | 97.13% | 2.87% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 51.28% | 48.72% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133412928 | T->C | LOC_Os01g57770(LOC_Os01g57770.1) | INTRON |