Detailed information of SNP:
|
SNP ID:
sf0133419216(Gbrowse)
Chromosome: chr01 Position: 33419216 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 54.40% | 45.60% |
| All Indica | 780 | 87.44% | 12.56% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 55 | 92.73% | 7.27% |
| Indica I | 368 | 89.67% | 10.33% |
| Indica II | 205 | 87.80% | 12.20% |
| Indica Intermediate | 207 | 83.09% | 16.91% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133419216 | A->G | LOC_Os01g57780(LOC_Os01g57780.1) | Synonymous |