Detailed information of SNP:
|
SNP ID:
sf0133424305(Gbrowse)
Chromosome: chr01 Position: 33424305 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 57.52% | 42.48% |
| All Indica | 799 | 95.74% | 4.26% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133424305 | G->A | LOC_Os01g57790(LOC_Os01g57790.1) | INTRON |