Detailed information of SNP:
|
SNP ID:
sf0133424614(Gbrowse)
Chromosome: chr01 Position: 33424614 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 64.08% | 35.92% |
| All Indica | 797 | 97.74% | 2.26% |
| All Japonica | 491 | 6.11% | 93.89% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 332 | 6.63% | 93.37% |
| Tropical Japonica | 91 | 4.40% | 95.60% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 38 | 63.16% | 36.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133424614 | G->A | LOC_Os01g57790(LOC_Os01g57790.1) | Non-Synonymous SNP |