Detailed information of SNP:
|
SNP ID:
sf0133425496(Gbrowse)
Chromosome: chr01 Position: 33425496 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 60.14% | 39.86% |
| All Indica | 797 | 92.47% | 7.53% |
| All Japonica | 497 | 5.03% | 94.97% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 88.24% | 11.76% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 335 | 6.87% | 93.13% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133425496 | T->C | LOC_Os01g57790(LOC_Os01g57790.1) | Synonymous |