Detailed information of SNP:
|
SNP ID:
sf0133431190(Gbrowse)
Chromosome: chr01 Position: 33431190 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1375 | 51.27% | 48.73% |
| All Indica | 755 | 20.53% | 79.47% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 350 | 23.14% | 76.86% |
| Indica II | 207 | 14.49% | 85.51% |
| Indica Intermediate | 198 | 22.22% | 77.78% |
| Temperate Japonica | 335 | 93.43% | 6.57% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133431190 | T->C | LOC_Os01g57800(LOC_Os01g57800.1) | INTRON |