Detailed information of SNP:
|
SNP ID:
sf0133433019(Gbrowse)
Chromosome: chr01 Position: 33433019 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1396 | 53.22% | 46.78% |
| All Indica | 790 | 90.51% | 9.49% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 55 | 21.82% | 78.18% |
| Indica I | 370 | 90.00% | 10.00% |
| Indica II | 210 | 94.76% | 5.24% |
| Indica Intermediate | 210 | 87.14% | 12.86% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 35.00% | 65.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133433019 | G->T | LOC_Os01g57800(LOC_Os01g57800.1) | Synonymous |