Detailed information of SNP:
|
SNP ID:
sf0133433031(Gbrowse)
Chromosome: chr01 Position: 33433031 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 56.26% | 43.74% |
| All Indica | 794 | 90.93% | 9.07% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 59 | 86.44% | 13.56% |
| Indica I | 371 | 91.64% | 8.36% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 87.14% | 12.86% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133433031 | G->A | LOC_Os01g57800(LOC_Os01g57800.1) | Synonymous |