Detailed information of SNP:
|
SNP ID:
sf0133433802(Gbrowse)
Chromosome: chr01 Position: 33433802 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 50.72% | 49.28% |
| All Indica | 776 | 85.57% | 14.43% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 360 | 83.61% | 16.39% |
| Indica II | 211 | 89.57% | 10.43% |
| Indica Intermediate | 205 | 84.88% | 15.12% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 32.50% | 67.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133433802 | T->A | LOC_Os01g57800(LOC_Os01g57800.1) | Synonymous |