Detailed information of SNP:
|
SNP ID:
sf0133433880(Gbrowse)
Chromosome: chr01 Position: 33433880 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 57.49% | 42.51% |
| All Indica | 792 | 91.16% | 8.84% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 91.15% | 8.85% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 206 | 89.81% | 10.19% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 48.72% | 51.28% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133433880 | C->T | LOC_Os01g57800(LOC_Os01g57800.1) | Synonymous |