Detailed information of SNP:
|
SNP ID:
sf0133434924(Gbrowse)
Chromosome: chr01 Position: 33434924 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 96.37% | 3.63% |
| All Indica | 791 | 94.44% | 5.56% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 61 | 91.80% | 8.20% |
| Indica I | 369 | 93.77% | 6.23% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133434924 | A->C | LOC_Os01g57810(LOC_Os01g57810.1) | Synonymous |