Detailed information of SNP:
|
SNP ID:
sf0133438675(Gbrowse)
Chromosome: chr01 Position: 33438675 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 62.92% | 37.08% |
| All Indica | 799 | 96.87% | 3.13% |
| All Japonica | 494 | 5.47% | 94.53% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 6.27% | 93.73% |
| Tropical Japonica | 92 | 5.43% | 94.57% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133438675 | A->C | INTERGENIC | None |