Detailed information of SNP:
|
SNP ID:
sf0133439165(Gbrowse)
Chromosome: chr01 Position: 33439165 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1378 | 76.20% | 23.80% |
| All Indica | 759 | 58.23% | 41.77% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 344 | 40.41% | 59.59% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 202 | 52.48% | 47.52% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133439165 | G->A | INTERGENIC | None |