Detailed information of SNP:
|
SNP ID:
sf0133475750(Gbrowse)
Chromosome: chr01 Position: 33475750 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 62.17% | 37.83% |
| All Indica | 799 | 97.12% | 2.88% |
| All Japonica | 497 | 2.82% | 97.18% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133475750 | T->A | LOC_Os01g57890(LOC_Os01g57890.2) | Synonymous |
| sf0133475750 | T->A | LOC_Os01g57890(LOC_Os01g57890.1) | Synonymous |