Detailed information of SNP:
|
SNP ID:
sf0133478441(Gbrowse)
Chromosome: chr01 Position: 33478441 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1289 | 88.60% | 11.40% |
| All Indica | 794 | 98.74% | 1.26% |
| All Japonica | 379 | 65.44% | 34.56% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 97.85% | 2.15% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 260 | 61.92% | 38.08% |
| Tropical Japonica | 64 | 92.19% | 7.81% |
| Japonica Intermediate | 55 | 50.91% | 49.09% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 82.86% | 17.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133478441 | C->A | LOC_Os01g57900(LOC_Os01g57900.1) | Non-Synonymous SNP |