Detailed information of SNP:
|
SNP ID:
sf0133487172(Gbrowse)
Chromosome: chr01 Position: 33487172 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 66.28% | 33.72% |
| All Indica | 795 | 42.89% | 57.11% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 46 | 82.61% | 17.39% |
| Indica I | 374 | 19.79% | 80.21% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 208 | 33.65% | 66.35% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133487172 | C->T | INTERGENIC | None |