Detailed information of SNP:
|
SNP ID:
sf0133495999(Gbrowse)
Chromosome: chr01 Position: 33495999 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 64.61% | 35.39% |
| All Indica | 789 | 39.54% | 60.46% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 16.04% | 83.96% |
| Indica II | 206 | 90.29% | 9.71% |
| Indica Intermediate | 209 | 31.58% | 68.42% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133495999 | G->A | INTERGENIC | None |