Detailed information of SNP:
|
SNP ID:
sf0133591407(Gbrowse)
Chromosome: chr01 Position: 33591407 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 58.07% | 41.93% |
| All Indica | 799 | 90.74% | 9.26% |
| All Japonica | 497 | 2.62% | 97.38% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 87.73% | 12.27% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133591407 | C->T | INTERGENIC | None |