Detailed information of SNP:
|
SNP ID:
sf0133594289(Gbrowse)
Chromosome: chr01 Position: 33594289 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 61.95% | 38.05% |
| All Indica | 799 | 97.12% | 2.88% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133594289 | G->C | LOC_Os01g58080(LOC_Os01g58080.3) | INTRON |
| sf0133594289 | G->C | LOC_Os01g58080(LOC_Os01g58080.2) | INTRON |
| sf0133594289 | G->C | LOC_Os01g58080(LOC_Os01g58080.1) | INTRON |