Detailed information of SNP:
|
SNP ID:
sf0133595893(Gbrowse)
Chromosome: chr01 Position: 33595893 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 61.52% | 38.48% |
| All Indica | 799 | 96.37% | 3.63% |
| All Japonica | 497 | 2.62% | 97.38% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133595893 | G->A | LOC_Os01g58080(LOC_Os01g58080.3) | UTR_3_PRIME |
| sf0133595893 | G->A | LOC_Os01g58080(LOC_Os01g58080.2) | UTR_3_PRIME |
| sf0133595893 | G->A | LOC_Os01g58080(LOC_Os01g58080.1) | UTR_3_PRIME |