Detailed information of SNP:
|
SNP ID:
sf0133603123(Gbrowse)
Chromosome: chr01 Position: 33603123 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1367 | 70.30% | 29.70% |
| All Indica | 747 | 49.40% | 50.60% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 337 | 25.82% | 74.18% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 198 | 40.91% | 59.09% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133603123 | T->A | LOC_Os01g58100(LOC_Os01g58100.1) | INTRON |