Detailed information of SNP:
SNP ID:
sf0133640572(Gbrowse)
Chromosome: chr01 Position: 33640572 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1417 | 62.10% | 37.90% |
All Indica | 799 | 97.00% | 3.00% |
All Japonica | 497 | 3.42% | 96.58% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 96.27% | 3.73% |
Indica II | 213 | 99.06% | 0.94% |
Indica Intermediate | 211 | 96.21% | 3.79% |
Temperate Japonica | 335 | 4.48% | 95.52% |
Tropical Japonica | 94 | 2.13% | 97.87% |
Japonica Intermediate | 68 | 0.00% | 100.00% |
Group VI/Aromatic | 14 | 7.14% | 92.86% |
Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0133640572 | A->C | INTERGENIC | None |