Detailed information of SNP:
|
SNP ID:
sf0133642898(Gbrowse)
Chromosome: chr01 Position: 33642898 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1390 | 55.32% | 44.68% |
| All Indica | 792 | 93.31% | 6.69% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 49 | 26.53% | 73.47% |
| Indica I | 371 | 96.23% | 3.77% |
| Indica II | 211 | 89.10% | 10.90% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 36.84% | 63.16% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133642898 | G->A | LOC_Os01g58194(LOC_Os01g58194.1) | INTRON |