Detailed information of SNP:
|
SNP ID:
sf0133647914(Gbrowse)
Chromosome: chr01 Position: 33647914 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 60.11% | 39.89% |
| All Indica | 799 | 95.74% | 4.26% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133647914 | C->A | LOC_Os01g58194(LOC_Os01g58194.1) | INTRON |