Detailed information of SNP:
|
SNP ID:
sf0133687469(Gbrowse)
Chromosome: chr01 Position: 33687469 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1397 | 61.49% | 38.51% |
| All Indica | 782 | 95.91% | 4.09% |
| All Japonica | 496 | 4.44% | 95.56% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 369 | 95.93% | 4.07% |
| Indica II | 210 | 97.14% | 2.86% |
| Indica Intermediate | 203 | 94.58% | 5.42% |
| Temperate Japonica | 335 | 5.67% | 94.33% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133687469 | C->T | INTERGENIC | None |