Detailed information of SNP:
|
SNP ID:
sf0133688903(Gbrowse)
Chromosome: chr01 Position: 33688903 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1371 | 63.75% | 36.25% |
| All Indica | 779 | 42.75% | 57.25% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 42 | 4.76% | 95.24% |
| Indica I | 362 | 18.23% | 81.77% |
| Indica II | 212 | 91.51% | 8.49% |
| Indica Intermediate | 205 | 35.61% | 64.39% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133688903 | C->T | INTERGENIC | None |