Detailed information of SNP:
|
SNP ID:
sf0133696643(Gbrowse)
Chromosome: chr01 Position: 33696643 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1225 | 74.12% | 25.88% |
| All Indica | 640 | 54.06% | 45.94% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 43 | 69.77% | 30.23% |
| Indica I | 305 | 62.30% | 37.70% |
| Indica II | 159 | 32.70% | 67.30% |
| Indica Intermediate | 176 | 59.09% | 40.91% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 31 | 74.19% | 25.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133696643 | G->A | LOC_Os01g58300(LOC_Os01g58300.1) | Non-Synonymous SNP |