Detailed information of SNP:
|
SNP ID:
sf0133757990(Gbrowse)
Chromosome: chr01 Position: 33757990 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1283 | 97.27% | 2.73% |
| All Indica | 795 | 98.49% | 1.51% |
| All Japonica | 389 | 96.14% | 3.86% |
| Aus | 49 | 91.84% | 8.16% |
| Indica I | 372 | 99.46% | 0.54% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 264 | 97.35% | 2.65% |
| Tropical Japonica | 73 | 93.15% | 6.85% |
| Japonica Intermediate | 52 | 94.23% | 5.77% |
| Group VI/Aromatic | 10 | 80.00% | 20.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133757990 | T->C | INTERGENIC | None |