Detailed information of SNP:
|
SNP ID:
sf0133788180(Gbrowse)
Chromosome: chr01 Position: 33788180 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 92.94% | 7.06% |
| All Indica | 799 | 98.00% | 2.00% |
| All Japonica | 497 | 90.95% | 9.05% |
| Aus | 65 | 49.23% | 50.77% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 87.46% | 12.54% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133788180 | A->G | LOC_Os01g58450(LOC_Os01g58450.1) | INTRON |