Detailed information of SNP:
|
SNP ID:
sf0133839215(Gbrowse)
Chromosome: chr01 Position: 33839215 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 87.86% | 12.14% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 496 | 81.45% | 18.55% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 78.51% | 21.49% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 67 | 74.63% | 25.37% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133839215 | G->C | LOC_Os01g58550(LOC_Os01g58550.1) | UTR_3_PRIME |