Detailed information of SNP:
|
SNP ID:
sf0133856948(Gbrowse)
Chromosome: chr01 Position: 33856948 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1285 | 97.51% | 2.49% |
| All Indica | 669 | 95.52% | 4.48% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 264 | 98.86% | 1.14% |
| Indica II | 210 | 89.05% | 10.95% |
| Indica Intermediate | 195 | 97.95% | 2.05% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133856948 | A->G | LOC_Os01g58570(LOC_Os01g58570.1) | Synonymous |