Detailed information of SNP:
|
SNP ID:
sf0133883613(Gbrowse)
Chromosome: chr01 Position: 33883613 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 79.06% | 20.94% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 497 | 43.86% | 56.14% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 40.30% | 59.70% |
| Tropical Japonica | 94 | 48.94% | 51.06% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0133883613 | A->G | INTERGENIC | None |