Detailed information of SNP:
|
SNP ID:
sf0134058226(Gbrowse)
Chromosome: chr01 Position: 34058226 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1380 | 97.75% | 2.25% |
| All Indica | 775 | 97.68% | 2.32% |
| All Japonica | 496 | 98.79% | 1.21% |
| Aus | 55 | 89.09% | 10.91% |
| Indica I | 372 | 98.66% | 1.34% |
| Indica II | 199 | 96.48% | 3.52% |
| Indica Intermediate | 204 | 97.06% | 2.94% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0134058226 | C->T | LOC_Os01g58920(LOC_Os01g58920.1) | INTRON |